eLignin Database

All references in database (by first author):

Today, the bibliome of eLignin consists of 330 scientific references (peer-reviewed articles, reviews and books). New references are continuously added.

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A


• Abe, T., Masai, E., Miyauchi, K., Katayama, Y., & Fukuda, M. (2005) A tetrahydrofolate-dependent O-demethylase, LigM, is crucial for catabolism of vanillate and syringate in Sphingomonas paucimobilis SYK-6 Journal of bacteriology 187(6): 2030-2037.
PubMed: 15743951
PMC: PMC1064056


• Acevedo, F., Pizzul, L., del Pilar Castillo, M., Cuevas, R., & Diez, M. C. (2011) Degradation of polycyclic aromatic hydrocarbons by the Chilean white-rot fungus Anthracophyllum discolor. Journal of hazardous materials 185(1): 212-219.
PubMed: 20934253


• Adav, S. S., Chao, L. T., & Sze, S. K. (2012) Quantitative secretomic analysis of Trichoderma reesei strains reveals enzymatic composition for lignocellulosic biomass degradation. Molecular & cellular proteomics 11(7): M111-012419.
PubMed: 22355001
PMC: PMC3394936


• Alexieva, Z., Yemendzhiev, H., & Zlateva, P. (2010) Cresols utilization by Trametes versicolor and substrate interactions in the mixture with phenol. Biodegradation 21(4): 625-635.
PubMed: 20127146


• Alvarez, H. M., Mayer, F., Fabritius, D., & Steinbüchel, A. (1996) Formation of intracytoplasmic lipid inclusions by Rhodococcus opacus strain PD630. Archives of microbiology 165(6): 377-386.
PubMed: 8661931


• Anderson, J. J., & Dagley, S. (1980) Catabolism of aromatic acids in Trichosporon cutaneum. Journal of bacteriology 141(2): 534-543.
PubMed: 7364712
PMC: PMC293656


• Antai, S. P., & Crawford, D. L. (1981) Degradation of softwood, hardwood, and grass lignocelluloses by two Streptomyces strains. Applied and environmental microbiology 42(2): 378-380.
PubMed: 16345837


• Antai, S. P., & Crawford, D. L. (1981) Degradation of softwood, hardwood, and grass lignocelluloses by two Streptomyces strains. Applied and environmental microbiology 42(2): 378-380.
PubMed: 16345837
PMC: PMC244017


• Antai, S. P., & Crawford, D. L. (1983) Degradation of phenol by Streptomyces setonii. Canadian Journal of Microbiology 29(1): 142-143.


• Aoyama, A., Yamada, K., Suzuki, Y., Kato, Y., Nagai, K., & Kurane, R. (2014) Newly-isolated laccase high productivity Streptomyces sp. grown in cedar powder as the sole carbon source. International Journal of Waste Resources, 4(2): 1-5.


• Arora, D. S., & Sandhu, D. K. (1985) Laccase production and wood degradation by a white-rot fungus Daedalea flavida. Enzyme and microbial technology 7(8): 405-408.


• Azman, H. (2015) Bioligninolysis: Degradation Of Ionic Liquid Derived Lignin By Rhodococcus PhD Thesis, Department Of Chemistry, Faculty Of Natural Sciences,Imperial College London : .


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B


• Bache, R., & Pfennig, N. (1981) Selective isolation of Acetobacterium woodii on methoxylated aromatic acids and determination of growth yields. Archives of Microbiology 130(3): 255-261.


• Bak, F., & Widdel, F. (1986) Anaerobic degradation of phenol and phenol derivatives by Desulfobacterium phenolicum sp. nov. Archives of microbiology 146(2): 177-180.


• Bak, F., Finster, K., & Rothfuß, F. (1992) Formation of dimethylsulfide and methanethiol from methoxylated aromatic compounds and inorganic sulfide by newly isolated anaerobic bacteria. Archives of microbiology 157(6): 529-534.


• Balkwill, D. L., Drake, G. R., Reeves, R. H., Fredrickson, J. K., White, D. C., Ringelberg, D. B., Chandler D. P., Romine M. F., Kennedy D. W., & Spadoni, C. M. (1997) Taxonomic Study of Aromatic-Degrading Bacteria from Deep-Terrestrial-Subsurface Sediments and Description of Sphingomonas aromaticivorans sp. nov., Sphingomonas subterranea sp. nov., and Sphingomonas stygia sp. nov. International Journal of Systematic and Evolutionary Microbiology, 47(1): 191-201.
PubMed: 8995822


• Bandounas, L., Wierckx, N. J., de Winde, J. H., & Ruijssenaars, H. J. (2011) Isolation and characterization of novel bacterial strains exhibiting ligninolytic potential. BMC Biotechnology 11(1): 94.
PubMed: 21995752
PMC: PMC3212925


• Barapatre, A., & Jha, H. (2017) Degradation of alkali lignin by two ascomycetes and free radical scavenging activity of the products. Biocatalysis and Biotransformation 35(4): 269-286.


• Barbe, V., Vallenet, D., Fonknechten, N., Kreimeyer, A., Oztas, S., Labarre, L., ... & Ornston, L. N. (2004) Unique features revealed by the genome sequence of Acinetobacter sp. ADP1, a versatile and naturally transformation competent bacterium. Nucleic Acids Research 32(19): 5766-5779.
PubMed: 15514110
PMC: PMC528795


• Barton, N., Horbal, L., Starck, S., Kohlstedt, M., Luzhetskyy, A., & Wittmann, C. (2018) Enabling the valorization of guaiacol-based lignin: Integrated chemical and biochemical production of cis, cis-muconic acid using metabolically engineered Amycolatopsis sp ATCC 39116. Metabolic engineering 45: 200-210.
PubMed: 29246517


• Belda E., van Heck R.G., José Lopez-Sanchez M., Cruveiller S., Barbe V., Fraser C., Klenk H.P., Petersen J., Morgat A., Nikel P.I., Vallenet D., Rouy Z., Sekowska A., Martins Dos Santos V.A., de Lorenzo V., Danchin A., Médigue C.. (2016) The revisited genome of Pseudomonas putida KT2440 enlightens its value as a robust metabolic chassis. Environmental microbiology. 18(10): 3403-3424.
PubMed: 26913973


• Benjamin, S., Kamimura, N., Takahashi, K., & Masai, E. (2016) Achromobacter denitrificans SP1 efficiently utilizes 16 phthalate diesters and their downstream products through protocatechuate 3, 4-cleavage pathway. Ecotoxicology and Environmental Safety 134: 172-178.
PubMed: 27619352


• Bentley SD, Chater KF, Cerdeño-TĂĄrraga AM, Challis GL, Thomson NR, James KD, Harris DE, Quail MA, Kieser H, Harper D, Bateman A, Brown S, Chandra G, Chen CW, Collins M, Cronin A, Fraser A, Goble A, Hidalgo J, Hornsby T, Howarth S, Huang CH, Kieser T, Larke L, Murphy L, Oliver K, O'Neil S, Rabbinowitsch E, Rajandream MA, Rutherford K, Rutter S, Seeger K, Saunders D, Sharp S, Squares R, Squares S, Taylor K, Warren T, Wietzorrek A, Woodward J, Barrell BG, Parkhill J, Hopwood DA. (2002) Complete genome sequence of the model actinomycete Streptomyces coelicolor A3 (2). Nature 417(6885): 141-147.
PubMed: 12000953


• Bergauer, P., Fonteyne, P. A., Nolard, N., Schinner, F., & Margesin, R. (2005) Biodegradation of phenol and phenol-related compounds by psychrophilic and cold-tolerant alpine yeasts. Chemosphere 59(7): 909-918.
PubMed: 15823324


• Bi, R., Lawoko, M., & Henriksson, G. (2016) Phoma herbarum, a soil fungus able to grow on natural lignin and synthetic lignin (DHP) as sole carbon source and cause lignin degradation. Journal of industrial microbiology & biotechnology 43(8): 1175-1182.
PubMed: 27260523


• Billings, A. F., Fortney, J. L., Hazen, T. C., Simmons, B., Davenport, K. W., Goodwin, L., Ivanova N., Kyrpides N. C., Mavromatis K., Woyke T., DeAngelis K.M. (2015) Genome sequence and description of the anaerobic lignin-degrading bacterium Tolumonas lignolytica sp. nov. Standards in genomic sciences 10(1): 106.
PubMed: 26594307
PMC: PMC4653933


• Bleichrodt, F. S., Fischer, R., & Gerischer, U. C. (2010) The ÎČ-ketoadipate pathway of Acinetobacter baylyi undergoes carbon catabolite repression, cross-regulation and vertical regulation, and is affected by Crc. Microbiology 156(5): 1313-1322.
PubMed: 20110298


• Butler, G., Rasmussen, M. D., Lin, M. F., Santos, M. A. S., Sakthikumar, S., Munro, C. A., Rheinbay, E., Grabherr, M., Forche, A., Reedy, J. L., Agrafioti, I., Arnaud /.../ & Cuomo, C. A. (2009) Evolution of pathogenicity and sexual reproduction in eight Candida genomes. Nature. 459(7247): 657-662.
PubMed: 19465905
PMC: PMC2834264


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C


• Cámara, B., Bielecki, P., Kaminski, F., dos Santos, V. M., Plumeier, I., Nikodem, P., & Pieper, D. H. (2007) A gene cluster involved in degradation of substituted salicylates via ortho cleavage in Pseudomonas sp. strain MT1 encodes enzymes specifically adapted for transformation of 4-methylcatechol and 3-methylmuconate. Journal of bacteriology 189(5): 1664-1674.
PubMed: 17172348
PMC: PMC1855727


• Causer, M. J., Hopper, D. J., McIntire, W. S., & SINGER, T. P. (1984) Azurin from Pseudomonas putida: an electron acceptor for p-cresol methylhydroxylase. Biochem. Soc. Trans. 12: 1131-1132.


• Chan, J. Z., Halachev, M. R., Loman, N. J., Constantinidou, C., & Pallen, M. J. (2012) Defining bacterial species in the genomic era: insights from the genus Acinetobacter. BMC microbiology, 12(1): 302.
PubMed: 23259572
PMC: PMC3556118


• Chandra, R., & Bharagava, R. N. (2013) Bacterial degradation of synthetic and kraft lignin by axenic and mixed culture and their metabolic products. Journal of Environmental Biology 34(6): 991.
PubMed: 24555327


• Chandra, R., Raj, A., Purohit, H. J., & Kapley, A. (2007) Characterisation and optimisation of three potential aerobic bacterial strains for kraft lignin degradation from pulp paper waste. Chemosphere 67(4): 839-846.
PubMed: 17150240


• Chang, A. J., Fan, J., & Wen, X. (2012) Screening of fungi capable of highly selective degradation of lignin in rice straw. International Biodeterioration & Biodegradation 72: 26-30.


• Chang, Y. C., Choi, D., Takamizawa, K., & Kikuchi, S. (2014) Isolation of Bacillus sp. strains capable of decomposing alkali lignin and their application in combination with lactic acid bacteria for enhancing cellulase performance. Bioresource technology 152: 429-436.
PubMed: 24316485


• Chang, Y. C., Choi, D., Takamizawa, K., & Kikuchi, S. (2014) Isolation of Bacillus sp. strains capable of decomposing alkali lignin and their application in combination with lactic acid bacteria for enhancing cellulase performance. Bioresource technology 152: 429-436.
PubMed: 24316485


• Chapman, P. J., & Ribbons, D. W. (1976) Metabolism of resorcinylic compounds by bacteria: orcinol pathway in Pseudomonas putida. Journal of bacteriology 125(3): 975-984.
PubMed: 1254564
PMC: PMC236174


• Chapman, P. J., & Ribbons, D. W. (1976). (1976) Metabolism of resorcinylic compounds by bacteria: alternative pathways for resorcinol catabolism in Pseudomonas putida. Journal of bacteriology 125(3): 985-998.
PubMed: 942589
PMC: PMC236175


• Chaudhry, M. T., Huang, Y., Shen, X. H., Poetsch, A., Jiang, C. Y., & Liu, S. J. (2007) Genome-wide investigation of aromatic acid transporters in Corynebacterium glutamicum. Microbiology 153(3): 857-865.
PubMed: 17322206


• Chen, H. P., Chow, M., Liu, C. C., Lau, A., Liu, J., & Eltis, L. D. (2012) Vanillin catabolism in Rhodococcus jostii RHA1. Applied and environmental microbiology 78(2): 586-588.
PubMed: 22057861
PMC: PMC3255756


• Chen, Y. H., Chai, L. Y., Zhu, Y. H., Yang, Z. H., Zheng, Y., & Zhang, H. (2012) Biodegradation of kraft lignin by a bacterial strain Comamonas sp. B-9 isolated from eroded bamboo slips. Journal of applied microbiology 112(5): 900-906.
PubMed: 22380656


• Chen, Y., Chai, L., Tang, C., Yang, Z., Zheng, Y., Shi, Y., & Zhang, H. (2012) Kraft lignin biodegradation by Novosphingobium sp. B-7 and analysis of the degradation process. Bioresource technology 123: 682-685.
PubMed: 22921251


• Chong, G. G., Huang, X. J., Di, J. H., Xu, D. Z., He, Y. C., Pei, Y. N., Tang, Y. & Ma, C. L. (2018) Biodegradation of alkali lignin by a newly isolated Rhodococcus pyridinivorans CCZU-B16. Bioprocess and biosystems engineering 41(4): 501-510.
PubMed: 7641141


• Chow, K. T., Pope, M. K., & Davies, J. (1999) Characterization of a vanillic acid non-oxidative decarboxylation gene cluster from Streptomyces sp. D7. Microbiology 145(9): 2393-2403..
PubMed: 10517592


• Chowdhury, S. P., Khanna, S., Verma, S. C., & Tripathi, A. K. (2004) Molecular diversity of tannic acid degrading bacteria isolated from tannery soil. Journal of applied microbiology 97(6): 1210-1219.
PubMed: 15546412


• Chung, S. Y., Maeda, M., Song, E., Horikoshij, K., & Kudo, T. (1994) A Gram-positive polychlorinated biphenyl-degrading bacterium, Rhodococcus erythropolis strain TA421, isolated from a termite ecosystem. Bioscience, biotechnology, and biochemistry 58(11): 2111-2113.


• Collier, L. S., Nichols, N. N., & Neidle, E. L. (1997) benK encodes a hydrophobic permease-like protein involved in benzoate degradation by Acinetobacter sp. strain ADP1. Journal of bacteriology 179(18): 5943-5946.
PubMed: 9294456
PMC: PMC179488


• Cook, K. A., & Cain, R. B. (1974) Regulation of aromatic metabolism in the fungi: metabolic control of the 3-oxoadipate pathway in the yeast Rhodotorula mucilaginosa. Microbiology 85(1): 37-50.
PubMed: 4474356


• Cowles, C. E., Nichols, N. N., & Harwood, C. S. (2000) BenR, a XylS homologue, regulates three different pathways of aromatic acid degradation in Pseudomonas putida. Journal of bacteriology 182(22): 6339-6346.
PubMed: 11053377
PMC: PMC94779


• Crawford, R. L., Bromley, J. W., & Perkins-Olson, P. E. (1979) Catabolism of protocatechuate by Bacillus macerans. Applied and environmental microbiology 37(3): 614-618.
PubMed: 453834
PMC: PMC243264


• Crawford, R. L., McCoy, E., Harkin, J. M., Kirk, T. K., & Obst, J. R. (1973) Degradation of methoxylated benzoic acids by a Nocardia from a lignin-rich environment: significance to lignin degradation and effect of chloro substituents. Applied microbiology 26(2): 176-184.
PubMed: 4743871
PMC: PMC379747


• Cronin, C. N., Kim, J., Fuller, J. H., Zhang, X., & Mcintire, W. S. (1999) Organization and sequences of p-hydroxybenzaldehyde dehydrogenase and other plasmid-encoded genes for early enzymes of the p-cresol degradative pathway in Pseudomonas putida NCIMB 9866 and 9869. DNA Sequence 10(1): 7-17.
PubMed: 10565539


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• D'Argenio, D. A., Segura, A., Coco, W. M., Bünz, P. V., & Ornston, L. N. (1999) The Physiological Contribution of Acinetobacter PcaK, a Transport System That Acts upon Protocatechuate, Can Be Masked by the Overlapping Specificity of VanK. Journal of bacteriology 181(11): 3505-3515.


• Daina, S., Orlandi, M., Bestetti, G., Wiik, C., & Elegir, G. (2002) Degradation of beta-5 lignin model dimers by Ceriporiopsis subvermispora. Enzyme and Microbial Technology 30(4): 499-505.


• Daniel, S. L., Wu, Z., & Drake, H. L. (1988) Growth of thermophilic acetogenic bacteria on methoxylated aromatic acids. FEMS microbiology letters 52(1-2): 25-28.


• Dardas, A., Gal, D., Barrelle, M., Sauret-Ignazi, G., Sterjiades, R., & Pelmont, J. (1985) The demethylation of guaiacol by a new bacterial cytochrome P-450. Archives of biochemistry and biophysics 236(2): 585-592.
PubMed: 3970527


• Davis J.R., Goodwin L.A., Woyke T., Teshima H., Bruce D., Detter C., Tapia R., Han S., Han J., Pitluck S., Nolan M., Mikhailova N., Land M.L., Sello J.K. (2012) Genome sequence of Amycolatopsis sp. strain ATCC 39116, a plant biomass-degrading actinomycete. Journal of bacteriology 194(9): 2396-2397.
PubMed: 22493203
PMC: PMC3347045


• Davis, J. R., & Sello, J. K. (2010) Regulation of genes in Streptomyces bacteria required for catabolism of lignin-derived aromatic compounds. Applied microbiology and biotechnology 86(3): 921-929.
PubMed: 20012281


• Davis, J.R., Goodwin, L., Teshima, H., Detter, C., Tapia, R., Han, C., Huntemann, M., Wei, C.-L., Han, J., Chen, A. (2013) Genome sequence of Streptomyces viridosporus strain T7A ATCC 39115, a lignin-degrading actinomycete. Genome announcements 1(4): e00416-00413.
PubMed: 23833133
PMC: PMC3703594


• DeAngelis, K.M., D'Haeseleer, P., Chivian, D., Fortney, J.L., Khudyakov, J., Simmons, B., Woo, H., Arkin, A.P., Davenport, K.W., Goodwin, L., Chen, A., Ivanova, N., Kyrpides, N.C., Mavromatis, K., Woyke, T., Hazen, T.C. (2011) Complete genome sequence of "Enterobacter lignolyticus" SCF1 Stand Genomic Sci 5(1): 69-85.
PubMed: 22180812
PMC: PMC3236048


• DeAngelis, K.M., Sharma, D., Varney, R., Simmons, B., Isern, N.G., Markilllie, L.M., Nicora, C., Norbeck, A.D., Taylor, R.C., Aldrich, J.T. & Robinson, E.W. (2013) Evidence supporting dissimilatory and assimilatory lignin degradation in Enterobacter lignolyticus SCF1 Frontiers in microbiology, 4: 280.
PubMed: 24065962
PMC: PMC3777014


• Defnoun, S., Labat, M., Ambrosio, M., Garcia, J. L., & Patel, B. K. (2000) Papillibacter cinnamivorans gen. nov., sp. nov., a cinnamate-transforming bacterium from a shea cake digester. International journal of systematic and evolutionary microbiology 50(3): 1221-1228.
PubMed: 10843066
PMC: 10.1099/00207713-50-3-1221


• Deligios, M., Fraumene, C., Abbondio, M., Mannazzu, I., Tanca, A., Addis, M.F., Uzzau, S. (2015) Draft genome sequence of Rhodotorula mucilaginosa, an emergent opportunistic pathogen. Genome announcements 3(2): e00201-00215.


• Delneri, D., Degrassi, G., Rizzo, R., & Bruschi, C. V. (1995) Degradation of trans-ferulic and p-coumaric acid byAcinetobacter calcoaceticus DSM 586. Biochimica et Biophysica Acta (BBA)-General Subjects 1244(2-3: 363-367.
PubMed: 7599157


• Deschamps, A. M., Mahoudeau, G., & Lebeault, J. M. (1980) Fast degradation of kraft lignin by bacteria. Applied Microbiology and Biotechnology, 9(1): 45-51.


• Divari, S., Valetti, F., Caposio, P., Pessione, E., Cavaletto, M., Griva, E., Gribaudo G, Gilardi G & Giunta C. (2003) The oxygenase component of phenol hydroxylase from Acinetobacter radioresistens S13. European journal of biochemistry 270(10): 2244-2253.
PubMed: 12752444


• Duan, J., Huo, X., Du, W. J., Liang, J. D., Wang, D. Q., & Yang, S. C. (2016) Biodegradation of kraft lignin by a newly isolated anaerobic bacterial strain, Acetoanaerobium sp. WJDL-Y2. Letters in applied microbiology 62(1): 55-62.
PubMed: 26465801


• Duan, J., Liang, J., Wang, Y., Du, W., & Wang, D. (2016) Kraft Lignin Biodegradation by Dysgonomonas sp. WJDL-Y1, a New Anaerobic Bacterial Strain Isolated from Sludge of a Pulp and Paper Mill. Journal of microbiology and biotechnology 26(10): 1765-1773.
PubMed: 27381334


• Durham, D.R., Mcnamee, C.G. & Stewart, D.B. (1984) Dissimilation of Aromatic-Compounds in Rhodotorula graminis - Biochemical-Characterization of Pleiotropically Negative Mutants J Bacteriol 160(2): 771-777.
PubMed: 6542098
PMC: PMC214803


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• Edlin, D. A., Narbad, A., Dickinson, J. R., & Lloyd, D. (1995) The biotransformation of simple phenolic compounds by Brettanomyces anomalus. FEMS Microbiology Letters 125(2-3): 311-315.


• Eggeling, L., & Sahm, H. (1980) Degradation of coniferyl alcohol and other lignin-related aromatic compounds by Nocardia sp. DSM 1069. Archives of Microbiology 126(2): 141-148.


• Eggert, C., Temp, U., & Eriksson, K. E. (1996) The ligninolytic system of the white rot fungus Pycnoporus cinnabarinus: purification and characterization of the laccase. Applied and Environmental Microbiology 62(4): 1151-1158.
PubMed: 8919775
PMC: PMC167880


• Elena, S., & Božena, K. (2001) Modification of lignin by Geotrichum klebahnii. World Journal of Microbiology and Biotechnology, 17(1): 1-3.


• Emerson, D., Chauhan, S., Oriel, P., & Breznak, J. A. (1994) Haloferax sp. D1227, a halophilic Archaeon capable of growth on aromatic compounds. Archives of microbiology 161(6): 445-452.


• Engelmann T., Kaufmann F., Diekert G. (2001) Isolation and characterization of a veratrol:corrinoid protein methyl transferase from Acetobacterium dehalogenans Archives of microbiology 175(5): 376-383..
PubMed: 11409548


• Erdoğmuş, S. F., Mutlu, B., Korcan, S. E., Güven, K., & Konuk, M. (2013) Aromatic hydrocarbon degradation by halophilic archaea isolated from Çamaltı Saltern, Turkey. Water, Air, & Soil Pollution, 224(3): 1449.


• Eriksson, K. E., Gupta, J. K., Nishida, A., & Rao, M. (1984) Syringic acid metabolism by some white-rot, soft-rot and brown-rot fungi. Microbiology 130(10): 2457-2464.


• Eriksson, K. E., Johnsrud, S. C., & Vallander, L. (1983) Degradation of lignin and lignin model compounds by various mutants of the white-rot fungus Sporotrichum pulverulentum. Archives of Microbiology 135(3): 161-168.


• Eulberg, D., Golovleva, L. A., & Schlömann, M. (1997) Characterization of catechol catabolic genes from Rhodococcus erythropolis 1CP. Journal of bacteriology 179(2): 370-381.
PubMed: 8990288
PMC: PMC178706


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F


• Fairley, D. J., Boyd, D. R., Sharma, N. D., Allen, C. C. R., Morgan, P., & Larkin, M. J. (2002) Aerobic metabolism of 4-hydroxybenzoic acid in Archaea via an unusual pathway involving an intramolecular migration (NIH shift). Applied and environmental microbiology 68(12): 6246-6255.
PubMed: 12450849


• Falcon, M. A., Rodriguez, A., Carnicero, A., Regalado, V., Perestelo, F., Milstein, O., & De la Fuente, G. (1995) Isolation of microorganisms with lignin transformation potential from soil of Tenerife Island. Soil Biology and Biochemistry 27(2): 121-126.


• Fialová, A., Boschke, E., & Bley, T. (2004) Rapid monitoring of the biodegradation of phenol-like compounds by the yeast Candida maltosa using BOD measurements. International biodeterioration & biodegradation 54(1): 69-76.


• Firrincieli, A., Otillar, R., Salamov, A., Schmutz, J., Khan, Z., Redman, R.S., Fleck, N.D., Lindquist, E., Grigoriev, I.V., Doty, S.L. (2015) Genome sequence of the plant growth promoting endophytic yeast Rhodotorula graminis WP1 Front Microbiol 6: .


• Fischer, R., Bleichrodt, F. S., & Gerischer, U. C. (2008) Aromatic degradative pathways in Acinetobacter baylyi underlie carbon catabolite repression. Microbiology 154(10): 3095-3103.
PubMed: 18832315


• Fleige, C., Hansen, G., Kroll, J., & Steinbüchel, A. (2013) Investigation of the Amycolatopsis sp. strain ATCC 39116 vanillin dehydrogenase and its impact on the biotechnical production of vanillin. Applied and environmental microbiology 79(1): 81-90.
PubMed: 23064333
PMC: PMC3536076


• Floudas D., Binder M., Riley R., Barry K., Blanchette R.A., Henrissat B., Martínez A.T., Otillar R., Spatafora J.W., Yadav J.S., Aerts A., Benoit I., Boyd A., Carlson A., Copeland A., Coutinho P.M., de Vries R.P., Ferreira P., Findley K., Foster B., Gaskell J., Glotzer D., Górecki P., Heitman J., Hesse C., Hori C., Igarashi K., Jurgens J.A., Kallen N., Kersten P., Kohler A., Kües U., Kumar T.K., Kuo A., LaButti K., Larrondo L.F., Lindquist E., Ling A., Lombard V., Lucas S., Lundell T., Martin R., McLaughlin D.J., Morgenstern I., Morin E., Murat C., Nagy L.G., Nolan M., Ohm R.A., Patyshakuliyeva A., Rokas A., Ruiz-Dueñas F.J., Sabat G., Salamov A., Samejima M., Schmutz J., Slot J.C., St John F., Stenlid J., Sun H., Sun S., Syed K., Tsang A., Wiebenga A., Young D., Pisabarro A., Eastwood D.C., Martin F., Cullen D., Grigoriev I.V., Hibbett D.S. (2012) The Paleozoic origin of enzymatic lignin decomposition reconstructed from 31 fungal genomes. Science 336(6089): 1715-1719.
PubMed: 22745431


• Fontaine, F. E., Peterson, W. H., McCoy, E., Johnson, M. J., & Ritter, G. J. (1942) A new type of glucose fermentation by Clostridium thermoaceticum. Journal of bacteriology 43(6): 701.
PubMed: 16560531
PMC: PMC373636


• Fukasawa, Y., Osono, T., & Takeda, H. (2011) Wood decomposing abilities of diverse lignicolous fungi on nondecayed and decayed beech wood. Mycologia 103(3): 474-482.
PubMed: 21262989
PMC: 10.3852/10-246


• Fukuhara Y., Kamimura N., Nakajima M., Hishiyama S., Hara H., Kasai D., Tsuji Y., Narita-Yamada S., Nakamura S., Katano Y., Fujita N., Katayama Y., Fukuda M., Kajita S., Masai E. (2013) Discovery of pinoresinol reductase genes in sphingomonads. Enzyme and microbial technology 52(1): 38-43.
PubMed: 23199737


• Furukawa, K., Hayase, N., Taira, K., & Tomizuka, N. (1989) Molecular relationship of chromosomal genes encoding biphenyl/polychlorinated biphenyl catabolism: some soil bacteria possess a highly conserved bph operon. Journal of bacteriology 171(10): 5467-5472.
PubMed: 2507526


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